Hi @JVGD, thanks for reporting this. Looking at the error message, I'm wondering if you can check if the folder '~/.atom/packages/pymakr' is in lower case, not uppercase as 'Pymakr'? There was a change from uppercase to lowercase a couple of versions ago, but in some cases the uppercase version stayed in some atom cache or config file, causing issues like this...
If it's in uppercase, please try to un-install and install the latest version of Pymakr (1.2.7). Some more suggestions to solve the issue were discussed here: https://github.com/pycom/pymakr-atom/issues/53